The requirements concerning the professional profile of university graduates are changing rapidly. In order to meet the newest requirements it is necessary to expand an amount of knowledge as well as to realise all the required changes. Thus, it is necessary to apply a flexible educational system which allows to observe changes at the markets and to response to it very quickly. The base of knowledge is substantial in this surrounding because it creates processes for the demanded profile of graduate. In the framework of this complex reality a specialised laboratory of the trans-operational transport and logistics will be developed, which offers a very good possibility to obtain practical skills and professional routine for the future graduates.