Globalisation and the concept of wider Europe create further challenges in the transport sector. Transport policy of the European Union is characterised by liberalisation and harmonisation. To ensure a quality of services in passenger transport, there are rising integrated transport systems. It takes advantages of different transport fields and is an effective way of ensuring a modern public transport. The project aims to create a model of an integrated transport system in passenger transport, which will be based on effective providing services on a qualitatively higher level. The proposed project will develop a new methodology for evaluating the quality of the transport subsystems that are mainly infrastructure and rolling stock. The project is focused on rail transport and its role in the integrated system as the capacity and environment friendly system.